species:   Bodot
pid:       PID1127
parent:    Bd-milR20
paralog:   
locus:     SACU01000014.1:1457883-1457971
matures:   ['UGGGCAGUCUGUGCGUGAGCU', 'UUCAUGACGCAGAUGCCUACG']
srr:       SRR8374848
genome:    /Users/jax/+Genomes/Fungal_genomes/Bodot.GCA_011064635.1_ASM1106463v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Hu2019-my.SRR8374848.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Hu2019-my.SRR8374848.cram SACU01000014.1:1457883-1457971

7 out of bounds
10 alignments
10 proper strand
6 stranded perfect matches

        ***********************                          ***********************         
UGCAGGCUCAUGGGCAGUCUGUGCGUGAGCUCCGGAGGUCGACCUUCCGGGAUGAUUGGUUCAUGACGCAGAUGCCUACGACAGUGGAA
(.((...((.((((((.(((((((((((((((((((((.....))))))).......)))))))).)))))))))))).))...)).).
----------UGGGCAGUCUGUGCGUGAGCU---------------------------------------------------------- l=21 a=3 c
-----------------------------------------------------------UUCAUGACGCAGAUGCCUACG--------- l=21 a=0 c*
----------UGGGCAGUCUGUGCGUGAGCU---------------------------------------------------------- l=21 a=3 ma
-----------------------------------------------------------UUCAUGACGCAGAUGCCUACG--------- l=21 a=0 ma*

----------UGGGCAGUCUGUGCGUGAGC----------------------------------------------------------- l=20 a=2 
----------UGGGCAGUCUGUGCGUGAGCU---------------------------------------------------------- l=21 a=3 (c,ma)
----------UGGGCAGUCUGUGCGUGAGCc---------------------------------------------------------- l=21 a=2 
----------UGGGCAGUCUGUGCGUGAGCUa--------------------------------------------------------- l=22 a=2 
----------UGGGCAGUCUGUGCGUGAGCUCCGG------------------------------------------------------ l=25 a=1 

mb-01011
ax-1011011
ku-01
ss-111111111100
fn-111
